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Go to JooCart admin panel,Find a button named "Parameters"(in Joomla 1.5.x) or "Options"(in Joomla 1.6.x-3.x) at the top-right or top-left corner.Click on it(in Joomla >=1.6.x See in Preferences Tab).
Set "Use Joomla buttons for JooCart" to Yes.
Done.Now you may see your button's color is changed according to Joomla css.
Please wait... it will take a second!